PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK21944.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 448aa    MW: 49096.9 Da    PI: 4.609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK21944.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.6e-09264311355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h+   rrRR+ri +++  L+el+P++        + a++L  A eY++sLq
  KFK21944.1 264 EMHKLSARRRRERIQERMIALQELIPHC-----NTSTTASMLDDAAEYMQSLQ 311
                 5799999********************8.....3467799************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-14258325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-13259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.087261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6265311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-9267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
VPDKIPIYHP KILFYFSSLD LINIIIIMGE DELLWKSGQA EGPTSDPPIL RGRGSGGEGE  60
GTAPFPFSPL YHQSLFFHEP EMVSSSSSSS WLHHQSFYPG VAYTPAIQPQ GSVSLAQPPP  120
SAPYDPPVEN LTGQFFAATR AENLMNVSSL RGNISGPSIP MVRELTQVGS SSAIEYTPVT  180
EGTKTPPTAT GGVSHTFVVP GLGRMEKAVV IETKAETEPV RIQPATEMES ADDKKREETE  240
ETEEAEETEE AAGSTPRKKS RATEMHKLSA RRRRERIQER MIALQELIPH CNTSTTASML  300
DDAAEYMQSL QMQIQMILIG CSSMSATYTS QFMPRMAMGM NRPPSTPFPG TPPFPSQAHM  360
ASLGPSYPAP PYPFPASEPS RIHIPTSQQP DLVSNQPPFP GYLNPYYTQF AGIEQMQQPF  420
PLQNQTTSQP NSSQASSDNE TEDDQQDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256273RKKSRATEMHKLSARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK21944.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550285.12e-99transcription factor bHLH119-like
SwissprotQ9SVU76e-97BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A087FWE20.0A0A087FWE2_ARAAL; Uncharacterized protein (Fragment)
STRINGA0A087FWE20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.12e-52bHLH family protein