PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042591m | ||||||||
Common Name | CISIN_1g042591mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 29448.7 Da PI: 4.549 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 4e-40 | 8 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rr+C++dC+lapyfpa+qp+ f+n+hklFG+sn+l+++k l+ e+r +am+s++yeA++r r Pv+G++gv+ +lq q+ q++a orange1.1g042591m 8 ACAACKYQRRRCSSDCPLAPYFPADQPRLFQNAHKLFGRSNILSIIKPLDAERRAEAMRSIIYEANIRDRYPVHGCLGVVCQLQYQIWQVEA 99 7******************************************************************************************* PP DUF260 93 elallkeel 101 el +++++l orange1.1g042591m 100 ELRAAQAQL 108 ***999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.633 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-38 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MTLKASQACA ACKYQRRRCS SDCPLAPYFP ADQPRLFQNA HKLFGRSNIL SIIKPLDAER 60 RAEAMRSIIY EANIRDRYPV HGCLGVVCQL QYQIWQVEAE LRAAQAQLDM YRQMYYQQQL 120 STVAADDVPS QLELGMALPY IDALSLLHNN NTNDDDDAVA SYSYNSYSSL YMDARDVWVE 180 DTHAANNNNG SRRDCDEMHP FFDTVDDRQS YVDSKEAYES SSEESLKDTT QSIEHVGENE 240 LKTAAACFTL TSFFFFLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 2 | 111 | 5 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 2 | 111 | 5 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423139.1 | 1e-160 | LOB domain-containing protein 27 | ||||
Refseq | XP_006479366.1 | 1e-160 | LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 2e-51 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A067EMK8 | 0.0 | A0A067EMK8_CITSI; Uncharacterized protein | ||||
STRING | XP_006479366.1 | 1e-160 | (Citrus sinensis) | ||||
STRING | XP_006423139.1 | 1e-160 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-49 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042591m |
Publications ? help Back to Top | |||
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