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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g038824m |
Common Name | CISIN_1g038824mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
MYB_related |
Protein Properties |
Length: 187aa MW: 21406.7 Da PI: 9.7372 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g038824m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 39 | 80 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++T++E+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++
orange1.1g038824m 39 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 80
79******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MGRPPCCDKL NVKKGLRRCG KSCRLRWTNY LRPDLKHESF TPQEEEMIIR LHAAIGSRWS 60 IIAQQLPGRT DNDVKNYWNT KLRKKLTEMG IDPVTHKPFS QILADYGNIG GLPKSGTRIG 120 CLNRDMSKNA FMMQKPEQHE SPFQVFSNIS SHLMTMVSPN VEPIKDTLLN HYNDHSNSMD 180 LLAQLQA
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Uniprot | TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. |
Functional Description ? help
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Source |
Description |
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |