PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037352m | ||||||||
Common Name | CISIN_1g037352mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 22336.8 Da PI: 10.1399 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.8e-12 | 23 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEde+l+ + + G + +W+ ++r g+ R++k+c +rw+++l orange1.1g037352m 23 RGFWTGEEDERLKSFILLNGEEggwNWEDVPRGAGLLRCGKSCHDRWFNHL 73 799*****************99*************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15 | 18 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-17 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-6 | 22 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-9 | 23 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.23E-4 | 26 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-16 | 26 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.783 | 74 | 118 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.6E-4 | 78 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-5 | 79 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-13 | 81 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.42E-4 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
YSEHIMEKMC PSCVSKDHHM IRRGFWTGEE DERLKSFILL NGEEGGWNWE DVPRGAGLLR 60 CGKSCHDRWF NHLNPNIRRG DFTLEEDELI INLCRAGSKW TNIGLLLPGR THKDVMNYCK 120 TSYMRNKMSN RGVDLLLISD REGSHQQPHH LLLLLLLKRK TSFKKSLRPK FRRTNWMEKR 180 AGNWIFISR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 2e-16 | 23 | 141 | 2 | 117 | MYB3 |
3zqc_D | 2e-16 | 23 | 141 | 2 | 117 | MYB3 |
3zqc_G | 2e-16 | 23 | 141 | 2 | 117 | MYB3 |
3zqc_J | 2e-16 | 23 | 141 | 2 | 117 | MYB3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015380573.1 | 6e-93 | transcription factor MYB32-like | ||||
Swissprot | Q9SZP1 | 2e-29 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A067G7A8 | 1e-137 | A0A067G7A8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006425416.1 | 2e-93 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33270 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-32 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037352m |