PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036664m | ||||||||
Common Name | CISIN_1g036664mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25831.7 Da PI: 7.2079 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.5 | 8.3e-37 | 24 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++rrkC+k+C la+yfpa+qpk+f+nvh+l+G+s vlk+l++++++++++ams++++e+++ra+ Pv+G++g+ ++l++ql+ + + orange1.1g036664m 24 ACAVCKYQRRKCEKNCKLAKYFPANQPKTFQNVHRLYGVSSVLKILDSVEDDKKDIAMSTVIFESNMRAEYPVHGCFGLTFRLHHQLQASME 115 7******************************************************************************************* PP DUF260 93 elallkee 100 el l++++ orange1.1g036664m 116 ELRLVNAQ 123 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 23 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-34 | 24 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
KLFFILCLVP SLIKMTIKGG TKQACAVCKY QRRKCEKNCK LAKYFPANQP KTFQNVHRLY 60 GVSSVLKILD SVEDDKKDIA MSTVIFESNM RAEYPVHGCF GLTFRLHHQL QASMEELRLV 120 NAQLAGNEFC VETDDDVKPF IKIEQNPNYY TDMFNNMPLG IQSPSSSHGI PIPLQELECI 180 NSIHDDRVMA FDHTIPDHDR NPYLEPKAKE VSDASRYIID CHIRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-21 | 20 | 124 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-21 | 20 | 124 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482664.2 | 1e-149 | LOB domain-containing protein 3-like | ||||
Swissprot | Q9STS6 | 3e-38 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A067FYF1 | 1e-168 | A0A067FYF1_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006431057.1 | 1e-144 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-40 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036664m |
Publications ? help Back to Top | |||
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