PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029398m
Common NameCISIN_1g024484mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 195aa    MW: 21478.2 Da    PI: 4.9809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029398mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-0715392348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia +++ gRt++++k+ w+++l
  orange1.1g029398m 15 RWSAIAGRLP-GRTDNEIKNVWHTHL 39
                       5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.134143IPR017930Myb domain
SuperFamilySSF466891.06E-7742IPR009057Homeodomain-like
CDDcd001674.27E-51239No hitNo description
Gene3DG3DSA:1.10.10.602.1E-121440IPR009057Homeodomain-like
PfamPF002491.2E-51539IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MFQVLYLINF APFSRWSAIA GRLPGRTDNE IKNVWHTHLK KKAAAVLKQN QKANTNTNNN  60
NNSDDHKQNS KATTAHDHQS AESAMSPQAS SSSDELSSVT TGETNNNNNS DRYCMDKYVK  120
GDHEQNVDSF ESFPVIDESF WTDTSLSENS SNLTSDFGGG LNEFAIGHHD YGGGMDFWYN  180
ILVTSGADSL TLPF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2223090.0KP222309.1 Citrus maxima myb-like protein Myb15 (MYB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489734.11e-128transcription factor MYB13-like
TrEMBLA0A067EQY41e-142A0A067EQY4_CITSI; Uncharacterized protein
STRINGXP_006489734.11e-128(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.24e-14myb domain protein 15