PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g019546m | ||||||||
Common Name | CISIN_1g019546mg, LOC102610198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 38202.2 Da PI: 4.5296 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r r +lg+f +a eAa a+++a+++++g orange1.1g019546m 78 CDYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPSAVEAALAYDHAARAMYG 128 68*****999.**********8...2.359***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.07E-28 | 78 | 138 | No hit | No description |
Pfam | PF00847 | 4.8E-12 | 78 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 79 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 79 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-20 | 80 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-30 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MAIQSKDSSP SLMMPLSSDR KRKRRDGVNV AETLERWRRY NESLESGNGE DKPMRRVPAK 60 GSKKGCMKGK GGPENGRCDY RGVRQRTWGK WVAEIREPNR GNRLWLGTFP SAVEAALAYD 120 HAARAMYGPC ARLNLPDVSR LNESSKDSDS TTSSNQSEIE DAKVKNDARE AESKIIAQPE 180 AELLSSPVKP KAKDEAEDNE KYYWGEQLDC KPEARDEPIL GSICDVKPET GDERKDATGI 240 DWLEGYDWSK DEMFDVNDLL DLLDNNPLCG SEQQSELSYY NLQAGSLDQS QFGYEKPLDP 300 FFQLRNPDME LPVGVNYAEH GASDYGLQFL KEEESDFGF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 80 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 19 | 24 | RKRKRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435820.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
Refseq | XP_006486246.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A067FRR3 | 0.0 | A0A067FRR3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NKB1 | 0.0 | A0A2H5NKB1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TBW4 | 0.0 | V4TBW4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006486246.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006435820.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8532 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05410.2 | 3e-42 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g019546m |
Entrez Gene | 102610198 |