PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005264m
Common NameCISIN_1g005270mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 706aa    MW: 76780.9 Da    PI: 5.8657
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005264mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06281301526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C+ Gd C +aHg
  orange1.1g005264m 281 PCPEFRK-GSCRQGDACEYAHG 301
                        8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.34E-1731164IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1932180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03875105IPR002110Ankyrin repeat
PROSITE profilePS5029716.83975174IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-1075144IPR020683Ankyrin repeat-containing domain
CDDcd002046.12E-1677174No hitNo description
SMARTSM002481.2E-5110142IPR002110Ankyrin repeat
PROSITE profilePS5008813.197110145IPR002110Ankyrin repeat
PRINTSPR014158.8E-5111126IPR002110Ankyrin repeat
PRINTSPR014158.8E-5129143IPR002110Ankyrin repeat
SMARTSM003561.0E-4276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035617311334IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202311335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MCSGLKRKPT QTGFIMDTDS QKQDGLCYNF SILLELTASD DLDGFRKAIE EDGHDIDESG  60
LWYGRIIGSR KMGFEERTPL MIASMFGSKD VVSYVIKSGH VDVNRACGSD GVTALHCAAS  120
GGSANSVEVV KLLLDASADV NSVDAYGNRP ADLIAKNCNL GFNSRKKVLQ ALLKGSGTGC  180
VEEIDNLCDQ VVYKMEEQEQ PEISTPRVLK DGAEKKEYPV DLTLPDIKNG IYGTDEFRMY  240
TFKVKPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGSC RQGDACEYAH  300
GIFECWLHPA QYRTRLCKDE TNCNRRVCFF AHKPEELRPL YASTGSAVPS PRSFSANGSS  360
FDMLSISPLA LGSPSAMIPP TSTPPLTPSG ASSPMGGTMW NQPNIAPPTL QLPGSRLKSA  420
RNARDMEFDM ELLGLENRRR QQQLIDEISS LSSPSGWANS LSSAAPFSSS ADRTGDMNRI  480
GGVKPTNLDD IFGSLNPTLM PQLQGTSLDA SASQLQSPTG IQMRQNMNQQ LRSSYPASSS  540
PVRPSQSFGI DTSGATAAAV LSSRSAAFAK RSQSFIERNT VSRHSGFSSP DSTAAVMPSN  600
LADWGSPDGK LDWGVQREDL NKLRKSASFG IRSNGGSVAT SETSTPATAD EPDVSWVQSL  660
VRDSPSIRSG QFGFEEQQCH LNSGGSEMLP AWVEQLYMEQ EQLVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.64020.0flower| fruit| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034674.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067FTX90.0A0A067FTX9_CITSI; Uncharacterized protein
STRINGXP_006425080.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein