PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna30428.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 299aa MW: 33103.6 Da PI: 8.3701

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna30428.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.6	4.2e-36	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++lkcprC+stntkfCyynny+ +qPr+fC+aC+r+WtkGG+lrnvPvGg rknk+++ mrna30428.1-v1.0-hybrid 44 QPEQLKCPRCESTNTKFCYYNNYNKTQPRHFCRACKRHWTKGGTLRNVPVGGHGRKNKRTR 104 56899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.7E-32	47	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.866	48	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-22	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGLSTKQVSS DGLDWSQTLQ LQAQSFELPK PPVARRQQQQ NQEQPEQLKC PRCESTNTKF 60 CYYNNYNKTQ PRHFCRACKR HWTKGGTLRN VPVGGHGRKN KRTRKPNSSA SAAKTTTNGA 120 GTISTTTRVI NNTNLAFDRT DGAQRLNSHL AIDGEQRLNT HMGVLLPQQS LITSSELDNH 180 IYSSSSGLSS TTMPFNFLQA GRAQVLSFPF SSSSTTSSSF DTISTSFQSP NVCNYPQDQF 240 IKSMEEPTIT SIMPSTTIPQ ANNPSVGMYT SNDWNWDDIE TLVSTDLNVA WDDSDMNP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna30428.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293605.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A2P6Q3W1	1e-173	A0A2P6Q3W1_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004293605.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	8e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	mrna30428.1-v1.0-hybrid