PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna28597.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 29261.3 Da PI: 4.9299 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 20 | 101 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 kv+ s+v+ +l lp+kf+ e+ + +e+++++ledesgr+++ k+ ++g+ l +GW++F +++L +gD+vvF+++ s mrna28597.1-v1.0-hybrid 20 KVMCLSNVTGCFCLNLPRKFCFEYL-P-KEDTMIVLEDESGREFQTKY--LVGKGG--LNAGWRGFSISHKLLAGDVVVFHRVTPS 99 6666788888899********9994.3.36779***************..666666..9**********************76656 PP EE CS B3 89 ef 90 +f mrna28597.1-v1.0-hybrid 100 KF 101 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 12 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-19 | 13 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-20 | 16 | 104 | No hit | No description |
PROSITE profile | PS50863 | 10.532 | 18 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-8 | 18 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-13 | 20 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MERVKKLEAN LAPEFPRVAK VMCLSNVTGC FCLNLPRKFC FEYLPKEDTM IVLEDESGRE 60 FQTKYLVGKG GLNAGWRGFS ISHKLLAGDV VVFHRVTPSK FKVTDGSNGL DEADCDLGIR 120 EIDGANIIAS GGAKVSIPSE PIQKNTIACN TSSAPISDHS GNDGEDFGSE VMDGIRLAES 180 VIPFKEVTGM ENFDVIINGL VLNSEFSKYH LTKYYELCRS QNSYLHEHIL ECLNFKLVAG 240 IISETINISD AIRACKITTS ETDFST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna28597.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024167395.1 | 1e-155 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A2P6PMB2 | 1e-153 | A0A2P6PMB2_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | EMJ00371 | 1e-109 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna28597.1-v1.0-hybrid |