PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27539.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 666aa MW: 75162.4 Da PI: 4.6074 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 7.5e-51 | 86 | 213 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWk 84 +pGfrFhPtdeelv +yLk+k+ +kkl+l +vi+e+d+yk++P++Lp + +k+++++w+fFs+rd+ky++ g r+nrat++gyWk mrna27539.1-v1.0-hybrid 86 QPGFRFHPTDEELVLYYLKRKICKKKLKL-NVIAETDVYKWDPEELPglSILKTGDRQWFFFSPRDRKYPNgGGRSNRATRHGYWK 170 69***************************.99***************644778899**************9678************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+++++ ++ vglkktLvfykgrap+ge+tdWvmhey+l mrna27539.1-v1.0-hybrid 171 ATGKDRNITC-YNRSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 213 **********.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-56 | 79 | 236 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.679 | 85 | 236 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-27 | 87 | 213 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MRLEAAFCAQ TNCSEGRPAC DDDRETVTTN CAERQRAKVG RHRRQPREEI WVPIEEIRGF 60 EFDLAESVMV SEDGLVSAFC DGHFWQPGFR FHPTDEELVL YYLKRKICKK KLKLNVIAET 120 DVYKWDPEEL PGLSILKTGD RQWFFFSPRD RKYPNGGGRS NRATRHGYWK ATGKDRNITC 180 YNRSVGLKKT LVFYKGRAPT GERTDWVMHE YTLDEEELKR CQNVQEYYAL YKVFKKSGPG 240 PKNGEQYGAP FREEDWADDE CPIINSSADR GISVEQIGEV VANYNAKPFG EVPLKQVEQI 300 TANGYANNNS EAHSTIDDLE EFMKQIADDA VLDLPQIDDL VHSLSQVVSE EETQSTVVDL 360 YSSEVKCPQS HTTFDPSGQQ GNEYASFDFT QSATSQTQLY EASEASASDV HKLESFTPIL 420 REEDFLEMDD LLGPEPTVSN TGNSGGNLQF NELDGFDLFQ DPAMFFNEMC PMDQGNVSHQ 480 FMNSMGSNVV NQFDYQIQPA PLQINHQLNQ ESTQINNQLW VQNERRDFYT STETTKGSGP 540 PFTSGVVHDS SNHCPQENPN QNGNEAAGVT SQFSSALWSF VESIPTTPAS ASENALVSRA 600 FERMSSFSRM RIIARSTNVP AGKDSETMRE SWKRGFFFLP VLVALCAIFW VLMASLGQWG 660 RCISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-45 | 87 | 213 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27539.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290458.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A2P6PRH1 | 0.0 | A0A2P6PRH1_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004290458.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-132 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | mrna27539.1-v1.0-hybrid |