PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26043.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 353aa    MW: 39916.7 Da    PI: 8.9783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26043.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.11.4e-56191451129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL+kkv ++++ + ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkat
  mrna26043.1-v1.0-hybrid  19 LPPGFRFHPTDEELISHYLHKKVMDSNFGC-KAIGDVDLNKSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKAT 103
                              79**************************99.88***************99999********************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++ +++lvg+kktLvfy+grapkgek++Wvmheyrle
  mrna26043.1-v1.0-hybrid 104 GKDKEIYK-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 145
                              ********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-6316169IPR003441NAC domain
PROSITE profilePS5100559.71119169IPR003441NAC domain
PfamPF023656.0E-3020144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEKFVLPAGN FKEDNQIDLP PGFRFHPTDE ELISHYLHKK VMDSNFGCKA IGDVDLNKSE  60
PWDLPYKAKM GEKEWYFFCV RDRKYPTGLR TNRATEAGYW KATGKDKEIY KGKSLVGMKK  120
TLVFYRGRAP KGEKSNWVMH EYRLEGKFSV HNLPKSAKNE WVICRVFEKS AGGKKVHISG  180
LPNSGSRGTE TGSSGLPPLL DSTPYNGAKT RPASESTYVP CFSNQESIDS QRNQGIVDYI  240
NNNNPLFSVS SNPSNNNNNN NNSFPRVTYQ YSAPVSSANF QFPSSVVMQD HLRALLENNV  300
SFMRQNFKTE RDMISVSQET GLTTDVNPEI SSVMANHEIG RRPFDDQDSF WM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541517513171NO APICAL MERISTEM PROTEIN
1ut4_B5e-541517513171NO APICAL MERISTEM PROTEIN
1ut7_A5e-541517513171NO APICAL MERISTEM PROTEIN
1ut7_B5e-541517513171NO APICAL MERISTEM PROTEIN
3swm_A5e-541517516174NAC domain-containing protein 19
3swm_B5e-541517516174NAC domain-containing protein 19
3swm_C5e-541517516174NAC domain-containing protein 19
3swm_D5e-541517516174NAC domain-containing protein 19
3swp_A5e-541517516174NAC domain-containing protein 19
3swp_B5e-541517516174NAC domain-containing protein 19
3swp_C5e-541517516174NAC domain-containing protein 19
3swp_D5e-541517516174NAC domain-containing protein 19
4dul_A5e-541517513171NAC domain-containing protein 19
4dul_B5e-541517513171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26043.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8573630.0JN857363.1 Rosa hybrid cultivar NAC2 protein (NAC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299340.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ21e-142NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2P6P2S70.0A0A2P6P2S7_ROSCH; Putative transcription factor NAM family
TrEMBLK9M2750.0K9M275_ROSHC; NAC2 protein
STRINGXP_004299339.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-137NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]