PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21528.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28288.1 Da PI: 7.2743 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.1 | 7.1e-29 | 84 | 171 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw vtk+ +eHnH mrna21528.1-v1.0-hybrid 84 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTINPRAPTRVGCMAMLSIKKLNIGKWIVTKFIKEHNH 168 9******************************************999.99************************************* PP FAR1 88 ela 90 +l mrna21528.1-v1.0-hybrid 169 ALI 171 995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-25 | 84 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MNFHIAVASV PDINVAHEVS NASTDAEFKR YNDGAVVGTS LQKILWVVQN DDMTQNSSQD 60 GSPVEVDEPY VGQEFGTEVD AQAFYNVYGL RMGFNTRMNY LSRSKHDGTI IARTFVCSKE 120 GYRKPDRRDK KTINPRAPTR VGCMAMLSIK KLNIGKWIVT KFIKEHNHAL IASKRPKGLV 180 EDQIPDDKKK IEELNRELFL ERERSTSLRK VIDLLFEHIE EHTQDLSNKV QHVVDEVKEI 240 ESEGKKPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21528.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302184.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12-like | ||||
TrEMBL | A0A315A5A0 | 1e-113 | A0A315A5A0_PRUYE; Uncharacterized protein | ||||
TrEMBL | M5W2V7 | 1e-115 | M5W2V7_PRUPE; Uncharacterized protein | ||||
STRING | XP_004302184.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-60 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21528.1-v1.0-hybrid |