PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21456.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 612aa MW: 70032.5 Da PI: 9.6668 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 453 | 515 | 1 | 47 |
TSSS-HHHHHHHHHHHHH.TTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGgg................tWktIartmgkgRtlkqcksrwqky 47 +g W++eE e l d+v++ l ++ +W++I++t+g +Rt c ++w++ mrna21456.1-v1.0-hybrid 453 KGQWSQEEYENLFDLVNKdLRMKvfeekktkhgmlrdniCWEAISETLG-TRTNAVCSLKWYNQ 515 799*************8757777**************************.************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.7 | 323 | 400 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.237 | 398 | 447 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3 | 402 | 449 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.36E-6 | 403 | 464 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 405 | 457 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.1E-9 | 406 | 464 | No hit | No description |
PROSITE profile | PS50090 | 8.525 | 448 | 516 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.012 | 452 | 518 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00645 | 456 | 514 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 458 | 516 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.26E-6 | 496 | 574 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.458 | 518 | 571 | IPR017877 | Myb-like domain |
SMART | SM00717 | 37 | 522 | 573 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MGRKEMTSLE FKSGKEKKKH KKKGKEEVNK DELERNFSVL EVGDKMGTNV VQTEDDNSGG 60 NHMISGEGAN KKKKRKREKD GDEMVIENMI DRKELFNEGE KSVGRTMGKL DSTGHVKKRK 120 KILEDVKKAM ATEYEDVAKI TNKGGNKKKK DKKQKKEKKV KKEKRENVDG ELGQNISSDG 180 IEAGVASKRV DGHIVEKGGL SLEKGRKEKR KHGKKSGTEL QESVAEDMGT DCNRKSEAVD 240 VENSKKGKKS KSQKHGIVEG CNEDKKKARS SKNSLKAQKG IGAPDNSEES APKKALKRVS 300 FSDDVEVFSP SDGPSDEHQD LVRGKRFSKE EDKIVEEAVL RYIDEHALGD DGLDMVLRCK 360 SHPEVKNHPE LKTCWKDIGA ALPWRPFKSV YYRAHILFER AEKRKWSPEE YEEVRKFHKD 420 KGADWRTLGD KLGKHRIHVK DAWRRIKLPN MKKGQWSQEE YENLFDLVNK DLRMKVFEEK 480 KTKHGMLRDN ICWEAISETL GTRTNAVCSL KWYNQLTSPL VSQKLWSDID DYRLLDALNS 540 LDACCIEDVD WDDLLEHRPG DVCQKRWYQM VKHIGQHALK SFPEQVEVLS KRYLADLIEA 600 REIYANKPAV D* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 78 | KKKKRKREK |
2 | 116 | 120 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21456.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291570.1 | 0.0 | PREDICTED: RNA polymerase I termination factor | ||||
Refseq | XP_011459291.1 | 0.0 | PREDICTED: RNA polymerase I termination factor | ||||
TrEMBL | A0A2P6QH27 | 0.0 | A0A2P6QH27_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004291570.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-125 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21456.1-v1.0-hybrid |