PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna19019.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 345aa MW: 37721.9 Da PI: 8.4875 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 168 | 226 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver ++dp ++++tY+ eHnh+ mrna19019.1-v1.0-hybrid 168 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERHRSDPGMFIVTYTAEHNHP 226 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 34.601 | 162 | 228 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-30 | 162 | 228 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-26 | 165 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-37 | 167 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 169 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEDDWDLTAV VRGCSTATTT TTTTTTTTTT KPTTSFISDL HHHFHSSPLL SSSFGQQGFV 60 SNNTSQTQTQ TQSFSVLPIV PDPIKPTSAI EELHDLYKPF FPKSHHKIHT PSLLSPPPQI 120 TPQPNFSSHQ QLHKHQPKLS ATNTTQRSKK RKNLLKKVCQ VPAESLSSDV WAWRKYGQKP 180 IKGSPYPRGY YRCSSSKGCM ARKQVERHRS DPGMFIVTYT AEHNHPAPTH RNSLAGSTRH 240 KPVSSPQSGS VTGGDSTKPK GGSPSSPATS AEEEVGRSVT MMDAKEEKQS PLADEDETEF 300 FRVCDTIVTD DFFVGLDGLA GDYFSDHSTA SFGGPWSTAT AASSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-22 | 155 | 229 | 5 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-22 | 155 | 229 | 5 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna19019.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470488.1 | 0.0 | PREDICTED: WRKY transcription factor 22 | ||||
TrEMBL | A0A2P6SHY3 | 0.0 | A0A2P6SHY3_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004308337.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-66 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna19019.1-v1.0-hybrid |