PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna18651.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 491aa MW: 54529.8 Da PI: 4.8112 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 309 | 354 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L mrna18651.1-v1.0-hybrid 309 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 354 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.1E-47 | 24 | 217 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.54E-18 | 304 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.015 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.31E-14 | 308 | 358 | No hit | No description |
Pfam | PF00010 | 7.2E-10 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 309 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-16 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MDDLIISPTS SSSLVSLPHE PATLQQRLQF ILQSQPELWS YAIFWLASND VENGRLLLGW 60 GDGHFQGPED PSPDLNNRLS SSGDGSLLHS DRRKILKGIQ SILNDTNNNN PELDMDNFMA 120 LNGDVSDAEW FYVMSLTRSF AIGDGSVPGK AFGSGSFVWL SGAHELQFNS CERAKEAQIH 180 GIETLICIPT SNGVLEMGSS GLVRENWGLI QQAKSLFGSD QPDPETRPLE FINRNFSFAD 240 IGIVAGVQEE DNSSYNDDKK HVLGYNKKKN NNGLQNPTPA DFADSDFQLK RTPKKRGRKP 300 GMGRDTPLNH VEAERQRREK LNHRFYALRA VVPNVSRMDK ASLLSDAVSY INELKAKVDE 360 LESQLQRESK KVKVEMADNL DNQSTTTTAS VEQTQTVTPD NNNNNNNGSG LEIEVKIVGT 420 DAMIRVQSEN VNYPSARLMT AMRDLEFQIH HASLSSINDL MLQDIVVKVP DNMKNEEGLK 480 AALLGILDQN E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-34 | 23 | 217 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-34 | 23 | 217 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-34 | 23 | 217 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-34 | 23 | 217 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna18651.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306627.1 | 0.0 | PREDICTED: transcription factor MYC2 | ||||
TrEMBL | A0A2P6SIR3 | 0.0 | A0A2P6SIR3_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004306627.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna18651.1-v1.0-hybrid |