PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18470.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 318aa    MW: 35323.3 Da    PI: 7.8257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18470.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235880123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  mrna18470.1-v1.0-hybrid 58 YSCSFCRREFRSAQALGGHMNVH 80
                             99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-65584No hitNo description
PROSITE profilePS5015711.2195885IPR007087Zinc finger, C2H2
SMARTSM003550.00985880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEQARYWMWA KRKHSSLMSA SHEVQVPSSH DESSWEEQAF AEDAAGPLGG CIWPPRSYSC  60
SFCRREFRSA QALGGHMNVH RRDRARLKQS PNEQNVETAH HHHGLPDQDH QDISVQINPF  120
SSTLGTFHQY PSHHQVCALV YNPNNPSSNP LSSPSRVSAQ LPGKNQICGQ EQITLNIPTS  180
RSSSVSNPPS RSILTGNRYY NNSVARNTEA AEKISRIVES GSCRANKGGD YVTTDLSVSL  240
NLVVRCARPS VSAGSDEDEA IISCKRRRIM EEKPSSKDSL PFFLKSEGFE VLSRPSSIEE  300
LDLELRLGDR PKVIKVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125380229superman protein
2l1o_A1e-125380229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264268KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18470.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8309230.0GU830923.1 Fragaria virginiana subsp. virginiana Superman-like protein FRASUP5 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302772.10.0PREDICTED: uncharacterized protein LOC101303530
TrEMBLD5LGH30.0D5LGH3_FRAVR; Superman-like protein FRASUP5
STRINGXP_004302772.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-31zinc-finger protein 10