PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16801.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 449aa    MW: 48930.4 Da    PI: 8.3755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16801.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34.1e-115377327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C+++ rtG C++G++C+F+H+p
  mrna16801.1-v1.0-hybrid 53 EPDCSYYIRTGLCRFGATCRFNHPP 77
                             789********************97 PP
2zf-CCCH32.21.8e-10108128727
                              SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                              +++++tGtCk+G++CkF+H++
  mrna16801.1-v1.0-hybrid 108 KYYLKTGTCKFGATCKFHHPR 128
                              79*****************96 PP
3zf-CCCH29.11.8e-09152174527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C +++rtG+Ck+ ++Ck++H+p
  mrna16801.1-v1.0-hybrid 152 ECAYYLRTGQCKFASTCKYHHPP 174
                              7********************97 PP
4zf-CCCH37.83.1e-12309335127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C+f+++tG Ck+G+ C+F+H++
  mrna16801.1-v1.0-hybrid 309 PGQPECQFYMKTGDCKFGAVCRFHHPR 335
                              5789*********************96 PP
5zf-CCCH40.16e-13355381127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++lC f++r+G+Ck+G++CkF H++
  mrna16801.1-v1.0-hybrid 355 PGEPLCIFYSRYGICKFGPSCKFDHPM 381
                              589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9575078IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-45077IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-75377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45676IPR000571Zinc finger, CCCH-type
SMARTSM003560.5598128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4108128IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8108128IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5150175IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6152174IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596308336IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5312338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5314336IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709354382IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5357381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDFDAGIPMS RASAAPPVTD EAPSLSPQDA MWQMNLRSSE TMEPGPYPER AGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERVGQPE CQACIFVKYY LKTGTCKFGA  120
TCKFHHPRDK AGIAGRVALN ILGYPLRPNE IECAYYLRTG QCKFASTCKY HHPPPTNMMV  180
SLSGSPVYPT VQSPTTPGQQ SYPGGVTNWS RASFIPSPRW QGPSSYAPVI VPQGVVSVPG  240
WSAYSGQVGS ISTSEGQQQT VGNSQVYGTS RQREPENLGS QGAYSPYRSG SIPVGFYALP  300
RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERLIP APDCVLSPIG LPLRPGEPLC  360
IFYSRYGICK FGPSCKFDHP MGIFTYNLAA SSSAESPVRR LLGSTSGTTS LNLSSEGLVE  420
AGSAKPRRLS LSEPRQMPSA EENIDTEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16801.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818084e-40LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132564e-40LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302155.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2P6R5340.0A0A2P6R534_ROSCH; Putative transcription factor C3H family
STRINGXP_004302155.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1