PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna15212.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14153.6 Da PI: 10.412 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.5 | 1.6e-20 | 11 | 100 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k ++ s+v++ +l lpk+f++++ +k++s ++tl+de+g++++v + ++r+ l++GWk+F+++++L egD +v++++ mrna15212.1-v1.0-hybrid 11 VKLMVYSHVSRVFWLGLPKDFCDANL-VKKKS-DITLQDEHGNQFTVVY----IPERHGLSGGWKKFAQEKKLHEGDAIVLQRT-- 88 688999****************9994.44444.8***************....455566***********************44.. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++l+v++fr+ mrna15212.1-v1.0-hybrid 89 GPKRLKVHIFRS 100 67778*****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.98E-25 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-22 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-24 | 8 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.084 | 10 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-17 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-19 | 11 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MGLDSKTPSI VKLMVYSHVS RVFWLGLPKD FCDANLVKKK SDITLQDEHG NQFTVVYIPE 60 RHGLSGGWKK FAQEKKLHEG DAIVLQRTGP KRLKVHIFRS AELLPKIQAE CVSSLEIKKK 120 QRNI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna15212.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459534.1 | 2e-89 | PREDICTED: B3 domain-containing protein Os03g0184500-like isoform X2 | ||||
TrEMBL | A0A2P6PYW8 | 9e-39 | A0A2P6PYW8_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_010483399.1 | 1e-29 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12433 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 3e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna15212.1-v1.0-hybrid |