PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna15013.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 332aa    MW: 36553.1 Da    PI: 8.7732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna15013.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.8e-27126186159
                              ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dgy+WrKYGqK+ k+++  pr+YYrC++a +Cpvkkkv+r+  d+++++ tYeg+Hnh+
  mrna15013.1-v1.0-hybrid 126 VKDGYQWRKYGQKVTKDNPlSPRAYYRCSMApTCPVKKKVQRCMLDKSILVATYEGHHNHD 186
                              58****************9469********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27118187IPR003657WRKY domain
PROSITE profilePS5081122.825121188IPR003657WRKY domain
SuperFamilySSF1182906.15E-23122187IPR003657WRKY domain
SMARTSM007742.2E-30126187IPR003657WRKY domain
PfamPF031061.4E-22127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEYSRCSSKE NQGDSLEADL QCVRKENEAL RFLVEAMSSK YTRLEAHLQL LRLQLQQNKS  60
PTHDDHHRMT TTGSGCHDIY DPTANKRART TAFAHCNHQQ HPQFPVANKT SQFLIRTDSK  120
DNTLIVKDGY QWRKYGQKVT KDNPLSPRAY YRCSMAPTCP VKKKVQRCML DKSILVATYE  180
GHHNHDTLDN SNSLLLGQII SSSPSSTLVP SPRNQILPVD FPQAAVVHGV LQSTSTSTAA  240
GPITMTSPLS RQEPTNLDLT LCGSKFKSNQ EENTPGRGGS PVGTISTADK TCENEKIQEY  300
VSSLTKDPNF TVALAAAVAR SIRTAPSAPN P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181251861372WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna15013.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459612.10.0PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A2P6PYA01e-158A0A2P6PYA0_ROSCH; Putative transcription factor WRKY family
STRINGXP_004291955.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-34WRKY DNA-binding protein 40