PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12765.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 26556.6 Da PI: 5.4815 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.2e-19 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe ++++ +++ + A++lgL+ rqV +WFqNrRa++k mrna12765.1-v1.0-hybrid 26 RRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 77 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.1e-39 | 24 | 115 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 + rr+s+eq+klLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++L mrna12765.1-v1.0-hybrid 24 NSRRFSDEQIKLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQSL 109 579*********************************************************************************** PP HD-ZIP_I/II 88 reelke 93 +l++ mrna12765.1-v1.0-hybrid 110 LIQLEK 115 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.76E-18 | 16 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-18 | 22 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.86E-15 | 23 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 26 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-16 | 26 | 77 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.3E-5 | 50 | 59 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 59 | 75 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-12 | 79 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEREAEILET HTSAKRKKNN KSQNSRRFSD EQIKLLESIF EADSKLEPRR KVQVARELGL 60 QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRN EYDLLASKFE SLKEEKQSLL IQLEKLNDLM 120 GKPKDHDEKL NDLMGKPKDH DADTDGKDLE GSSSKDGNCE TTEEKPSHLQ SHKNIASNDV 180 GDEGQDQLMN MCQVEAIPED WNRFDSGCLF DPLRSSSATS QWFNFWIN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 79 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12765.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP058663 | 1e-163 | KP058663.1 Rosa hybrid cultivar homeobox-leucine zipper protein 2 (HB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307928.1 | 1e-168 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 5e-41 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | J7FWS7 | 1e-132 | J7FWS7_ROSRU; Homeobox leucine zipper | ||||
STRING | XP_004307928.1 | 1e-168 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 3e-42 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | mrna12765.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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