PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11354.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 401aa MW: 44226.6 Da PI: 6.5731 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 142 | 162 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd+C FaHg mrna11354.1-v1.0-hybrid 142 ACPDFRK-GHCKKGDSCEFAHG 162 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.296 | 89 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 137 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 138 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-6 | 142 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 142 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 172 | 196 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 172 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MMLGEPHRPN PTIHVPPWLN LDDPTAEIYS SPYPLSGVSV TSDVTSPNSP YHLNEALATL 60 RRYLPSNEVS DPDPDPYPDS EFDLDNDSPV DAYSCDHFRM FEFKVRRCAR GRSHDWTDCP 120 FAHPGEKARR RDPRKFHYSG TACPDFRKGH CKKGDSCEFA HGVFECWLHP ARYRTQPCKD 180 GTSCKRRVCF FAHTPEQLRV LPQQSPRGSN SVTSSMESYD GSPMRQAMEL AKGMPFLSAS 240 PEISPENSPP MSPMTRSVSR SLGSSSVSEM VASLRNLQLG KVKSLPTSWN VQVGSVGSVG 300 SPGFVSPRGS MLRPGFCSLP STPTRIPTRS TVGGFLDFCD EGCEEEVPME RVESGRDLRA 360 KMFERLREEN SLGRVDPTLA LGGSSGAPDV GWVSELVNCE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11354.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459526.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | Q9M0G2 | 1e-135 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2P6RJZ3 | 0.0 | A0A2P6RJZ3_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004287502.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-113 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11354.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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