PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09406.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 192aa MW: 21606.4 Da PI: 8.295 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l ++++++G g+W++ + g+ R++k+c++rw +yl mrna09406.1-v1.0-hybrid 13 KGAWSKQEDEKLTQYIQKHGEGSWRSLPVAAGLLRCGKSCRLRWVNYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l mrna09406.1-v1.0-hybrid 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.44 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-28 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.444 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-26 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-16 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MRKPCCEKKT TNKGAWSKQE DEKLTQYIQK HGEGSWRSLP VAAGLLRCGK SCRLRWVNYL 60 RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLMHLGI 120 DPNNHRIGHN ICLNKQVNHP CKSANSQANN DDADDSDDPL LDSTSSGPES NISCSLPDLN 180 LDLTIGLPWS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 12 | 115 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09406.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299543.1 | 1e-139 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 4e-76 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2P6P1Y5 | 1e-131 | A0A2P6P1Y5_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004299543.1 | 1e-138 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-73 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | mrna09406.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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