PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05436.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 14402.9 Da PI: 9.6746 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.1e-13 | 43 | 105 | 37 | 98 |
EEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 37 tledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 t+ + g+sWe+++ +k +++ l + Wk Fv++n+Lk+gD +vF+++ + ++ el+v+++r mrna05436.1-v1.0-hybrid 43 TVLNFAGKSWEMTC--GGKHRKHKLDkESWKAFVDDNKLKAGDGCVFEVMeCStTKLELRVQILR 105 577889********..888888777648********************76566688899999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.25E-9 | 28 | 105 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-11 | 35 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-10 | 43 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.207 | 43 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-11 | 45 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MRRNQVFRGR QFKKQGPLKL YVDIQAGIPA KLHSILPPCS IPTVLNFAGK SWEMTCGGKH 60 RKHKLDKESW KAFVDDNKLK AGDGCVFEVM ECSTTKLELR VQILRGDIPA ELLEKERGDE 120 AEKPIVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05436.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004303740.1 | 3e-69 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_011467480.1 | 3e-69 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A2P6RZ46 | 2e-56 | A0A2P6RZ46_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004303740.1 | 1e-68 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna05436.1-v1.0-hybrid |