PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04800.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 36752.4 Da PI: 4.716 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 8.1e-13 | 11 | 56 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk+ G+++W++I ++ + Rt+k+c++rw + mrna04800.1-v1.0-hybrid 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56 79*************************8887799**********87 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.3e-12 | 67 | 106 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++ eE+ +++ +q+G++ W++Ia ++ gRt++++k++w mrna04800.1-v1.0-hybrid 67 KFSLEEERVVIELQAQFGNK-WAKIATHLA-GRTDNDVKNFW 106 799*****************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 6 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.729 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.91E-27 | 8 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-10 | 10 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-10 | 13 | 58 | No hit | No description |
Pfam | PF13921 | 2.1E-12 | 14 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 60 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.72 | 63 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 64 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-9 | 67 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEGKRDEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP 60 NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLAGRTDN DVKNFWSSRQ KRLARILQTS 120 TAAITPSKSH KNRREIPVYH DEVPTLEEPE YRENPKHFFF KEIPKFSCSS EGESSSQAAS 180 CSSPCIGNSD ALQMVPVPDL LDSKFLGFEA DPVQQEPALP EKNLWIESQP LIPFLENQQP 240 QTDLEFSSDQ ELLKLDFDML TTLDAELGKQ LDIGPPFLEP VGSCGNVEGE MIDDPITPDC 300 VFDDFPADMF DQIELLPNGS NPSHD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 9 | 112 | 25 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04800.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308519.1 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
TrEMBL | A0A2P6SF29 | 0.0 | A0A2P6SF29_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004308519.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3693 | 31 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 4e-71 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna04800.1-v1.0-hybrid |