PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02109.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 466aa    MW: 53395.4 Da    PI: 8.049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02109.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-066182223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C+ Cg sF+ + +Lk+H+ +H
  mrna02109.1-v1.0-hybrid 61 TCEECGASFKKPAYLKQHMLSH 82
                             6*******************99 PP
2zf-C2H216.82e-05192216123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y+C+  dC  +++rk++L+rH+  H
  mrna02109.1-v1.0-hybrid 192 YVCTidDCRSTYRRKDHLNRHLLQH 216
                              99*******************9887 PP
3zf-C2H213.50.00021261285123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++C+   Cgk+F   s L++H  +H
  mrna02109.1-v1.0-hybrid 261 HVCQepGCGKVFQFASKLRKHEDSH 285
                              689999***************9888 PP
4zf-C2H213.60.00019352376223
                              EET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                              kC+   C  +F+ ksnL rH +  H
  mrna02109.1-v1.0-hybrid 352 KCEyeGCLHTFTKKSNLLRHVKAvH 376
                              79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-51782No hitNo description
SMARTSM00355431942IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-55883IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4486087IPR007087Zinc finger, C2H2
SMARTSM003550.00886082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576672.9E-7180218No hitNo description
Gene3DG3DSA:3.30.160.602.7E-9188218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.577192219IPR007087Zinc finger, C2H2
SMARTSM003550.0054192216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194216IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827221251IPR007087Zinc finger, C2H2
SMARTSM003551.2221246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-8256285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.83E-5257286No hitNo description
PROSITE profilePS5015710.097261290IPR007087Zinc finger, C2H2
SMARTSM003550.035261285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263285IPR007087Zinc finger, C2H2
SMARTSM003551.2293318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295318IPR007087Zinc finger, C2H2
SMARTSM0035514321342IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133351381IPR007087Zinc finger, C2H2
SMARTSM003550.0072351376IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5352378IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280353376IPR007087Zinc finger, C2H2
SuperFamilySSF576676.75E-8361404No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6379403IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141382413IPR007087Zinc finger, C2H2
SMARTSM003553.7382408IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280384408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEKGEAEEKR PIFRDIRRYY CEYCGICRSK KTLIASHKLA QHKDEMELAK GDEVEVDKSN  60
TCEECGASFK KPAYLKQHML SHSLEESACL RTIPFGSREA LDPTKELQNA RGYELEWTST  120
RGETSCEAPS SDPQSRSVRI RTSEKYCFDG VKHWIPNKEL QNARGFSLSG LVPGGRPPVK  180
LHQVTLNHTR PYVCTIDDCR STYRRKDHLN RHLLQHQGKI FKCPIENCKS EFAFQGNVKR  240
HVVEFHSEDC PSTGVEGQKQ HVCQEPGCGK VFQFASKLRK HEDSHVKLDS VEAFCSEPDC  300
MKYFSNKQCL QEHIQSCHTH IACEICGKKV WKKNIRSHLS THEEGASSLE IKCEYEGCLH  360
TFTKKSNLLR HVKAVHLQQK PYACSFSGCG KTFSYKHVRD KHENSGCHGD FEEADEQFRS  420
RPRGGCKRIC PTVEMLVRKR VTPPDQFGPE TEFLSQLFSQ EEDER*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02109.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287098.10.0PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-108TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P6RJH40.0A0A2P6RJH4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004287098.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA