PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01621.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | DBB | ||||||||
Protein Properties | Length: 213aa MW: 23958.6 Da PI: 6.6003 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.1 | 1.7e-08 | 3 | 43 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ +++ e++ fC ++ lC+ C H+ H+ mrna01621.1-v1.0-hybrid 3 IRCNFCDKAEATVFCSADEAALCDVCDRRVHHAnklaskHK 43 58**************************9964436666665 PP | |||||||
2 | zf-B_box | 23.4 | 1.2e-07 | 55 | 93 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + C+ ++e + lfC++++ +C++C ++Hk Ht+ mrna01621.1-v1.0-hybrid 55 SPQCDICQERRGFLFCQEDRAIFCRECDNSIHKAneHTR 93 689*******9*********************8888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.68 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-6 | 3 | 43 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.63E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 4.7E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.698 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.0E-6 | 55 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.19E-8 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MKIRCNFCDK AEATVFCSAD EAALCDVCDR RVHHANKLAS KHKRFFLLQP TCKDSPQCDI 60 CQERRGFLFC QEDRAIFCRE CDNSIHKANE HTRKHNRFLL TGVKLSADST QYPPSSSSCS 120 FSNEVVITNS TDHARVASKS STKRPRTGSN EQTSSYKVEE NCSLSDNGSV SSTNSISEYL 180 MGDQITEWRV EDLLDVSFDF DSFYEAKSAP YI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01621.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004292420.1 | 1e-157 | PREDICTED: B-box zinc finger protein 20-like | ||||
Swissprot | Q0IGM7 | 4e-59 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 5e-59 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2P6PPU0 | 1e-123 | A0A2P6PPU0_ROSCH; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | XP_004292420.1 | 1e-156 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-54 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | mrna01621.1-v1.0-hybrid |