PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna01437.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 512aa    MW: 56743.5 Da    PI: 6.207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna01437.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000625575323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C++C k F +   L  H+r+H
  mrna01437.1-v1.0-hybrid 55 CHICQKGFESGKALGGHMRMH 75
                             ********************9 PP
2zf-C2H215.35.6e-05110132123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C  Cgk F++k +L  H+r+H
  mrna01437.1-v1.0-hybrid 110 HVCIECGKIFPSKKSLYGHMRSH 132
                              56779*****************9 PP
3zf-C2H212.80.00035364386123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+ksF ++  L  H+++H
  mrna01437.1-v1.0-hybrid 364 YTCSLCNKSFQSHQALGGHMSSH 386
                              9********************99 PP
4zf-C2H211.40.00096437459123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +C+++F +   L  H+r+H
  mrna01437.1-v1.0-hybrid 437 HQCRICNRTFLTGQALGGHMRSH 459
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6195380IPR007087Zinc finger, C2H2
SMARTSM003550.45375IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-75475IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-10110132No hitNo description
PROSITE profilePS5015710.845110137IPR007087Zinc finger, C2H2
PfamPF139122.2E-5110134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5110137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.9E-4110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-10359386No hitNo description
PfamPF139121.6E-9363387IPR007087Zinc finger, C2H2
SMARTSM003550.0025364386IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157364391IPR007087Zinc finger, C2H2
PROSITE patternPS000280366386IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-5435462No hitNo description
PROSITE profilePS501579.577437464IPR007087Zinc finger, C2H2
PfamPF139121.2E-9437460IPR007087Zinc finger, C2H2
SMARTSM003550.019437459IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280439459IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDMEHQEITN PDITESNNNN GGGLLIKLKM AKAEPFSEQG NRKPETLAPR FTKICHICQK  60
GFESGKALGG HMRMHVQESK GLIKSSSKSP KPNSATELFS TSATDSGGEH VCIECGKIFP  120
SKKSLYGHMR SHPDRPYRGI EPPTQFSKNS STSTLSDALP QKPNLAEDQQ IDSAGTARVW  180
FGPNPKAVRD LVKVVPSWSK TAKRGRKGTS SLDSETDSES DDDDCADDED EELDMSEAVH  240
DLMMLAQANP KGAEEATNSN FMTKNNQDHD VKDIRVIDYL GVAKKRKKLE IEEDGDLEKP  300
RNQLELGLDL KYDSEEELSD SENSESIVLA NMMKRKKRRK MKLEDLDGAV VVDHQHQSHH  360
HKVYTCSLCN KSFQSHQALG GHMSSHNKLK NNNNSNNIQY SAEHDHHHQS GSEDTNNANA  420
NLTNTATQID HDQAESHQCR ICNRTFLTGQ ALGGHMRSHW NGQNDQAQSS QTGRKGLDID  480
LNELPPMEYE QGIDYSGAGY ATSSYNSINL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283287KKRKK
2333339KRKKRRK
3335339KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna01437.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296116.10.0PREDICTED: uncharacterized protein LOC101314738
TrEMBLA0A2P6QL910.0A0A2P6QL91_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004296116.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-13C2H2 family protein