PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna00600.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 307aa MW: 34100.1 Da PI: 8.1125 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.4 | 2.9e-32 | 22 | 75 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l++m+vkgLt++hvkSHLQ++R+ mrna00600.1-v1.0-hybrid 22 PRLRWTPELHHCFVQAIERLGGHKKATPKLVLQIMDVKGLTISHVKSHLQMFRS 75 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.195 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-30 | 18 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 20 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 22 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-8 | 23 | 73 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MSTSSSCGRN GAVRPYIRSK VPRLRWTPEL HHCFVQAIER LGGHKKATPK LVLQIMDVKG 60 LTISHVKSHL QMFRSMRGGD LSRAPDESLT HQRKQSFEEH SDGCLDHEVN VMGFLSASKP 120 IPESDPQVIY SVPRRSKPIT ESDPQAIYTD PSHSKRARIE TTSCSISERQ QQWSQTTHET 180 APYSYDHYGL VLANGVSLSQ PQHYLYNFNN PFLKSAFQES DFFKIDEKHE AKLHKQENTG 240 RAHKEGGDCQ LSLSLSLHHP SSNTSIASSS EDIGGAISGF NYKDCSTFSS ANRGVDLNLS 300 IALCGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 23 | 77 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 23 | 77 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 23 | 77 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 23 | 77 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 23 | 77 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna00600.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004297794.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2P6R4F1 | 0.0 | A0A2P6R4F1_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004297794.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5539 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna00600.1-v1.0-hybrid |