PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold12356-snap-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | AP2 | ||||||||
Protein Properties | Length: 521aa MW: 56949.5 Da PI: 6.3308 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 178 | 227 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g maker-scaffold12356-snap-gene-0.3-mRNA-1 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.9 | 2.4e-13 | 270 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g maker-scaffold12356-snap-gene-0.3-mRNA-1 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 320 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-9 | 178 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-15 | 178 | 236 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.31E-11 | 179 | 237 | No hit | No description |
PROSITE profile | PS51032 | 17.622 | 179 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-17 | 179 | 235 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-33 | 179 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-16 | 270 | 328 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-9 | 270 | 320 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.33E-24 | 270 | 328 | No hit | No description |
PROSITE profile | PS51032 | 15.514 | 271 | 328 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-15 | 271 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-30 | 271 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 272 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 310 | 330 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MLDLNLSVAS QNSGKFSGSS RMESSGTGSF NSSSGVNTTT GAVSAGGVTG GCGFAGGGGG 60 GGGDDDSTSN YDAAFGYSFS ILRKNKELDI DRGGGGGGDE EEEEDGDDCS VRNNDRTIQL 120 FPVAGDGAVS DVTGWLDLTS TFGEAAEQRI VPQQQQQQQQ QQKPLVKKSR RGPRSRSSQY 180 RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFTISDYD 240 DDLRQMSNFS KDEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL 300 FDSEIEAARA YDKAAIKCNG REAVTNFEPC SYGGEIFAEA DNGEGNQSLD LQLGIALPSF 360 ADREQENENV SGFHFQHGWD DRPIDGRSRI ENSSSATVRA QLPHRPMEAS EHAPIWSGVN 420 SGFFSMYKER AMEKRTEVDS LPNWPRQIQG PYGGVTQVPL FSTAASSGFP SLTTTSPSAA 480 VGQLHFPNTT IRPPPYFANN HLHHQHIPFL LQELKQVPGR T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807836.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | Q8H443 | 1e-105 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2N9IL37 | 0.0 | A0A2N9IL37_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0006s13460.1 | 1e-170 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-103 | related to AP2.7 |
Publications ? help Back to Top | |||
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