PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06187-snap-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 124aa    MW: 14299 Da    PI: 9.1176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06187-snap-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.9e-12242451
                                        AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                                               +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  maker-scaffold06187-snap-gene-0.16-mRNA-1  2 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 42
                                               9**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-8245IPR016177DNA-binding domain
PfamPF008473.9E-6244IPR001471AP2/ERF domain
SMARTSM003801.8E-4257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-6347IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRGVYFKNMK WQAAIKVDKK QIHLGTVGSQ EEAARLYDRA AFMCGREPNF ELSEEEKQEL  60
RKFKWEEFLA ITRHAITSKK HKRRLGAGSQ RRSESPLQNS DWDGKPEVNG HSTSEDMEPD  120
TSAS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893003.13e-88ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_023893004.13e-88ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP93e-42ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2I4FFB76e-78A0A2I4FFB7_JUGRE; ethylene-responsive transcription factor-like protein At4g13040 isoform X1
STRINGPOPTR_0002s24750.42e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-44ERF family protein