PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05349-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 339aa    MW: 38642.9 Da    PI: 6.3
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05349-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12201226126
                                                    --S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                    y   +C+++ +tG+C yGd+CkF+H+
  maker-scaffold05349-augustus-gene-0.22-mRNA-1 201 YQPDICKDYKETGYCGYGDSCKFMHD 226
                                                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9198231IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878200228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-12201231IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10201226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.1E-12267320IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.2E-8278319No hitNo description
SuperFamilySSF578504.71E-12278322No hitNo description
SMARTSM001840.0019279316IPR001841Zinc finger, RING-type
CDDcd001624.40E-7279320No hitNo description
PROSITE profilePS5008910.114279317IPR001841Zinc finger, RING-type
PROSITE patternPS005180294303IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGLTPYVNDF QESLMSDSGE KQQPEQVCNF FIKSSRNKNI RKRTVDEDEK EDSKTEGSFL  60
QSQKKTIKPD NKLYTSTGSS NKNKMSTEAK EESEKPIFQF ESSKDIQVEH DSRATATLET  120
ETEFSRDARA LHERSLKQAE EALKGRGKSS GDEKFYKGIH GYTDYKADFR REQTFASEKA  180
GGAHGPLRAS AHIRVSMRFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEKEW  240
DEAEKASKRN LALGLDDEDD GGVDPGEEDE EDDSLPFACF ICRKPFIDAV VTKCKHYFCE  300
HCALKHHAKN KKCFVCNKPT LGIFNTAHEI LKRIAVEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-642533412317RING finger protein 113A
5z58_M1e-642533412317RING finger protein 113A
6ff4_t1e-642533412317RING finger protein 113A
6ff7_t1e-642533412317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914998.10.0zinc finger CCCH domain-containing protein 1-like
RefseqXP_023914999.10.0zinc finger CCCH domain-containing protein 1-like
RefseqXP_023915000.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2I4F8E70.0A0A2I4F8E7_JUGRE; zinc finger CCCH domain-containing protein 1-like isoform X3
TrEMBLA0A2N9IGI10.0A0A2N9IGI1_FAGSY; Uncharacterized protein
STRINGcassava4.1_027613m1e-179(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-161C3H family protein