PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04558-snap-gene-0.13-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 320aa MW: 37311.6 Da PI: 8.309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.3e-06 | 48 | 69 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H maker-scaffold04558-snap-gene-0.13-mRNA-1 48 TCQECGATFTKPAYLKQHMQSH 69 6*******************99 PP | |||||||
2 | zf-C2H2 | 19 | 3.7e-06 | 75 | 99 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp dC+ s++rk++L+rH+ H maker-scaffold04558-snap-gene-0.13-mRNA-1 75 YTCPvdDCHSSYRRKDHLTRHLLQH 99 9********************9887 PP | |||||||
3 | zf-C2H2 | 16.4 | 2.5e-05 | 104 | 129 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +Cg Fs + n++rH + H maker-scaffold04558-snap-gene-0.13-mRNA-1 104 FKCPieNCGHEFSYQGNMTRHVNEfH 129 89*******************99888 PP | |||||||
4 | zf-C2H2 | 16.2 | 2.9e-05 | 213 | 237 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++Hi+ H maker-scaffold04558-snap-gene-0.13-mRNA-1 213 KCHydGCLHTFSTKSNLHQHIKAvH 237 79*******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-7 | 45 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.17E-10 | 46 | 99 | No hit | No description |
PROSITE profile | PS50157 | 12.05 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.004 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.6E-11 | 69 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 75 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 75 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.77E-6 | 85 | 148 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-5 | 102 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.655 | 104 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 104 | 129 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 106 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 23 | 154 | 179 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 156 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 15 | 182 | 203 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.14E-7 | 195 | 249 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 212 | 242 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 212 | 237 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.6E-5 | 212 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 214 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 238 | 266 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.2 | 243 | 269 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.517 | 243 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 245 | 269 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDEMGEIEKP IFRDIRRYYC EYCGICRKRW KRIRLMGEEE KEGKKSNTCQ ECGATFTKPA 60 YLKQHMQSHS VERLYTCPVD DCHSSYRRKD HLTRHLLQHQ GKLFKCPIEN CGHEFSYQGN 120 MTRHVNEFHS KDCPPISAEP QKQFVCQEIG CGKALCCEPG CMKYFSNDEC LKAHIQSCHQ 180 HITCEICGTK QLRRNIKRHL QIHEDTVSLE RVKCHYDGCL HTFSTKSNLH QHIKAVHLEL 240 KPFACSFTGC GVRFAHKHVR DKHEKTGCHV HTTGDFEESD EQFQSRIRGG RKRKCPTVEM 300 LIRKRISPPS PPSQSDEESD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 4e-11 | 43 | 266 | 18 | 183 | Aart |
2i13_B | 4e-11 | 43 | 266 | 18 | 183 | Aart |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920458.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-115 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2N9IQ50 | 1e-170 | A0A2N9IQ50_FAGSY; Uncharacterized protein | ||||
STRING | EMJ25229 | 1e-158 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-115 | transcription factor IIIA |