PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04505-augustus-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 351aa    MW: 38998.4 Da    PI: 7.1696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04505-augustus-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH51.12.2e-16268293126
                                                    --S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                    yktelC+ +++tG+C+yGd+C+FaHg
  maker-scaffold04505-augustus-gene-0.13-mRNA-1 268 YKTELCNKWQETGECPYGDNCQFAHG 293
                                                    9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-20262300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-12264299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.953267295IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-10267294IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-13268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-8301335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-11301334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103305333IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4305332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQTDSSSSTV TANTMSASPF KSQLFHPNDV VYSSLYSSPP TYSSDSLNSD SVSNSNSDSN  60
RLYHSRTVQE HQEIVNRNSL YLTRLREATG EVEALRQENS HLHVVNRDLN KQLSLLIHAL  120
LRSSATSNDF NTAASFSALD AAFRRLRIGG VGGGAGGGMN EGSDHDHDQI PWDDVAAVPD  180
LIESPTSVIE SGRLQNADVE RFSLPKSISV RSNGYLKNNQ PAGSTRTTRT ATRPRPASPL  240
IATQKVYVPG VKKEEEPLEL EVYNQGMYKT ELCNKWQETG ECPYGDNCQF AHGVEELRPV  300
LRHPRYKTEV CRMVLNGVVC PYGHRCHFRH ALTEQERAMG PLLPRAIKLE R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22268334470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842954.11e-133PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F58e-72C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2N9I7K01e-151A0A2N9I7K0_FAGSY; Uncharacterized protein
STRINGcassava4.1_022862m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-66C3H family protein