PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold04418-augustus-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 471aa MW: 51460 Da PI: 5.1062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold04418-augustus-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	364	401	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L maker-scaffold04418-augustus-gene-0.7-mRNA-1 364 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 401 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	352	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.08E-6	362	406	No hit	No description
SuperFamily	SSF47459	1.44E-11	362	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	366	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAEEFQTGIC GGNWWMNPSR STFTGSSSPC SMALNDTGSY AWSDMVDMKG RPCEETNSVS 60 DSSIVFQDVQ KPQQQADSAS GCGSSSILID STLQMMGYGL SSSSTTSDWN QALLRNSGRA 120 ESNYSSMLQE EMNSRLNYQQ ERGVDSTQIQ KNWSPKNLSN GGDQQDNSSI TAFKSSISQD 180 FSLDTVSSST GNCTATCQGL STSFPVGSAS YGYPSTLIQS LFDPDPQPQQ SLFNNRSLSY 240 SSATNFGATT NELSPSWPRF APFLPKQQPC GLHFTNNTPF WNASTAVATV GLNDSVRAGV 300 FPSSPSQYLV PTFEEKPKCS NHATKPITED VQDSVSVVKK SVNEPVFKRP RIETPSPLPT 360 FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYMKNGTPIQ 420 HQQVCDKLDT EGPKQDLRTR GLCLVPISST YPVANETTAD FWTPTFGGTF R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAEEFQTGIC GGNWWMNPSR STFTGSSSPC SMALNDTGSY AWSDMVDMKG RPCEETNSVS  60
DSSIVFQDVQ KPQQQADSAS GCGSSSILID STLQMMGYGL SSSSTTSDWN QALLRNSGRA  120
ESNYSSMLQE EMNSRLNYQQ ERGVDSTQIQ KNWSPKNLSN GGDQQDNSSI TAFKSSISQD  180
FSLDTVSSST GNCTATCQGL STSFPVGSAS YGYPSTLIQS LFDPDPQPQQ SLFNNRSLSY  240
SSATNFGATT NELSPSWPRF APFLPKQQPC GLHFTNNTPF WNASTAVATV GLNDSVRAGV  300
FPSSPSQYLV PTFEEKPKCS NHATKPITED VQDSVSVVKK SVNEPVFKRP RIETPSPLPT  360
FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYMKNGTPIQ  420
HQQVCDKLDT EGPKQDLRTR GLCLVPISST YPVANETTAD FWTPTFGGTF R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023873977.1	0.0	transcription factor bHLH112 isoform X1
TrEMBL	A0A2N9HA99	0.0	A0A2N9HA99_FAGSY; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	9e-71	bHLH family protein