PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03116-snap-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 330aa    MW: 36644.1 Da    PI: 6.4283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03116-snap-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12177223455
                                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                 h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  maker-scaffold03116-snap-gene-0.21-mRNA-1 177 DHVLAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYLKQLQ 223
                                                58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16178237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.45E-13178227No hitNo description
SMARTSM003534.2E-15179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEISSAKWIS ELEMEDPTFI HQYEINSFGY SLDDLDFNSF SGESYPSNPD LNPKSTYNFH  60
ASVIENPHTD LGRPAKQLKT NSWNSCATDH IPSKAASSSS SHFISFENSN SPPAISQQFY  120
GLDCTMKQKS EAASDRNTNF PAMISESSFG MKNCSSKHGQ VPKKVASMTR TPLHAQDHVL  180
AERKRREKLS QRFIALSAVV PGLKKMDKAS VLGDAIKYLK QLQERVKTLE EQAAKKTMES  240
VVFVKKTRLS AADDTSSSED NSDSESNEQL PQIEARVLEK DVLIRIHCEN RKGYAAKILG  300
EIEKLDLAIV NSSVLPFGNS TLDITVVAQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14177226857Transcription factor MYC2
5gnj_B2e-14177226857Transcription factor MYC2
5gnj_E2e-14177226857Transcription factor MYC2
5gnj_F2e-14177226857Transcription factor MYC2
5gnj_G2e-14177226857Transcription factor MYC2
5gnj_I2e-14177226857Transcription factor MYC2
5gnj_M2e-14177226857Transcription factor MYC2
5gnj_N2e-14177226857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893414.10.0transcription factor bHLH18-like
RefseqXP_023893415.10.0transcription factor bHLH18-like
RefseqXP_023893416.10.0transcription factor bHLH18-like
TrEMBLA0A2N9J9N10.0A0A2N9J9N1_FAGSY; Uncharacterized protein
STRINGcassava4.1_010938m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-54bHLH family protein