PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02989-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 377aa    MW: 42333.3 Da    PI: 9.2028
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02989-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.5e-1186125544
                                                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                                                    k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  maker-scaffold02989-augustus-gene-0.23-mRNA-1  86 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 125
                                                    7789************************876666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-879128No hitNo description
SMARTSM003386.6E-882155IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.28984128IPR004827Basic-leucine zipper domain
PfamPF001702.7E-886126IPR004827Basic-leucine zipper domain
CDDcd147081.16E-2286138No hitNo description
SuperFamilySSF579594.38E-786128No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141443.5E-31178251IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRPPTLNIFP SQPMHVEPSS TKTSTGLVSP SNSGSKRPSE PSMELANARN DVPTGPEPAK  60
AIKREGNRKG PTSSSEQEGP KTPDPKTLRR LAQNREAARK SRLRKKAYVQ QLESSRIKLT  120
QLEQELQRAR AQGMFFGGGA LIGGDQGHPL AVNNVSSDAA FFDIEYARWL EEHHRITCEL  180
RAAVQEHLPE NELRLFVDNF LAHFDEKMNL KSMVAKADVF HLVSGMWKTP AERCFMWMGG  240
FRPSELIKIL LNQVEPLTEQ QILGICGLQQ TTQEAEEALS QGLEALNQSL TDTITSDSLS  300
SPPNMANYMG QMAMAINKLS TIEGFVRQAD NLRHQMIHRL HQILTTRQAA RCFLAIAEYF  360
HRLRALSSLW LARPRQE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923120.10.0bZIP transcription factor TGA10
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0B0PJ740.0A0A0B0PJ74_GOSAR; Uncharacterized protein
TrEMBLA0A2I4DN030.0A0A2I4DN03_JUGRE; transcription factor TGA2.2
STRINGXP_010111398.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-161bZIP family protein