PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02244-snap-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 447aa    MW: 49819.5 Da    PI: 5.7787
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02244-snap-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-1795184299
                                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                                                +k+++ps+v+   +l lpk+f+ +h   + +++ + ledesg+ +e k+     +  + l++GW++F 
  maker-scaffold02244-snap-gene-0.24-mRNA-1  95 VKTMLPSNVTGGFWLGLPKHFCHAHL--PMQDTAIFLEDESGEAFETKY--LAEK--VGLSAGWRGFS 156
                                                699*******************8883..446779***************..4444..55********* PP

                                                HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  70 kangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                 +++L egD+vvF+l++ s+f  +v ++r+
  maker-scaffold02244-snap-gene-0.24-mRNA-1 157 ISHKLMEGDIVVFHLVKPSRF--KVYIVRS 184
                                                ***************998888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-2387186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-2087186IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-2692183No hitNo description
PROSITE profilePS5086312.81694185IPR003340B3 DNA binding domain
SMARTSM010191.0E-1694185IPR003340B3 DNA binding domain
PfamPF023624.5E-1595184IPR003340B3 DNA binding domain
PfamPF052663.0E-8326430IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAVADQKQSQ CPTASSPKKR RRPAKTMGKL LLKKVPGFNQ MADKQAVNNK KLQGPKRVKR  60
ATVDSLYDSF EAQSCVLERA KEIQANLEPE FPSLVKTMLP SNVTGGFWLG LPKHFCHAHL  120
PMQDTAIFLE DESGEAFETK YLAEKVGLSA GWRGFSISHK LMEGDIVVFH LVKPSRFKVY  180
IVRSNGSDEV DGALALLKLD PGMKFMKCDK DTKACEELVN ETLKTLSQED TQKNSIMVCV  240
TDPGPIVDLS EDDSDIGSEI LDGIRLSDSA VDFKQVRSIE DFTVLVNGLV INSELPKFLL  300
TKYFELCCSQ KTFLHEHLLE GLNCKLAAGM ISETINVADA IRACKISTSQ ESLSTWDKTL  360
KAFEVLGMNV GFLRARLEQL LNISLKLKRY KEATLVRTQA EEEVQTLEAK LLEVKEKINS  420
LDAEIENLDV AADKLEVVFQ EVANAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622PKKRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912859.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2N9HU750.0A0A2N9HU75_FAGSY; Uncharacterized protein
STRINGXP_008236526.11e-173(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-40B3 family protein