PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01972-augustus-gene-0.27-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 610aa MW: 70787 Da PI: 6.7812 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67 | 4.9e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk +++r r++ r+gC+a maker-scaffold01972-augustus-gene-0.27-mRNA-1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKPIGEHHRDRKSVRCGCDA 130 59********************8888.************************************* PP FAR1 65 klkvkkek...dgkwevtkleleHnHela 90 k+ ++ke ++w v ++++ HnHel maker-scaffold01972-augustus-gene-0.27-mRNA-1 131 KMYLSKEIvegVSQWFVVQFSNVHNHELL 159 *****998767889*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.262 | 481 | 517 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-7 | 489 | 516 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.5E-5 | 492 | 519 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MTSLPSKNIW IRRQQCPCGD WKCYVSYEGD AEETSIASQL VKNDIVPLES MVAPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPIGEHHRD 120 RKSVRCGCDA KMYLSKEIVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGHLP FLERDVRNFV QNRKKVVQEN DALLTEKREN 240 DTLELLEACK ATKETDEDFT FVRFMRGRCP QTILTDLDTG LIDAIRSELP NTKHVTSIWN 300 IVSKLPSWFS LLLGSRYAEF KSEFDVLYHV DTVDEFDLRW NQLLSMFGLG SDKHIALLFS 360 FRASWALSYM RGYFLARMAT TAYSKSVDSF LKGVFSAQTC LRSFFEQVGI SANFQNHAHL 420 AMQYMRIKTC IPIEDHARSI LTPFAFNALQ NELVMTMQYA TSEMANGSYI VRHFKKMDGE 480 YLVIWIPEDE QIHCSCKEFE SSGILCRHAL KILIVKNYFH LPDKYFLSRW RRESSPVIYE 540 DNCTQNGEDE WFQEYHCLTE TLFSESSITK ERSDYVRIEL TKELTRLLNE VRNLPEIDGV 600 AMDLTLSPTC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027368884.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X4 | ||||
Swissprot | Q9LKR4 | 1e-117 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A1S3VLH9 | 0.0 | A0A1S3VLH9_VIGRR; Uncharacterized protein | ||||
STRING | XP_002530218.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-120 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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