PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01940-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 184aa    MW: 20896.8 Da    PI: 9.579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01940-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171360148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT++Ed++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  maker-scaffold01940-augustus-gene-0.19-mRNA-1 13 KGAWTKQEDQKLIDYIQKHGEGCWRSLPEAAGLLRCGKSCRLRWVNYL 60
                                                   79******************************99************97 PP
2Myb_DNA-binding54.52.7e-1766111148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold01940-augustus-gene-0.19-mRNA-1  66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111
                                                    89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23462IPR009057Homeodomain-like
PROSITE profilePS5129415.882860IPR017930Myb domain
SuperFamilySSF466896.6E-2912107IPR009057Homeodomain-like
SMARTSM007174.9E-141262IPR001005SANT/Myb domain
PfamPF002491.8E-161360IPR001005SANT/Myb domain
CDDcd001672.85E-111560No hitNo description
PROSITE profilePS5129426.45961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2663116IPR009057Homeodomain-like
SMARTSM007171.4E-1665113IPR001005SANT/Myb domain
PfamPF002495.9E-1666111IPR001005SANT/Myb domain
CDDcd001679.02E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRKPCCEKNE TNKGAWTKQE DQKLIDYIQK HGEGCWRSLP EAAGLLRCGK SCRLRWVNYL  60
RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LKRKLVQKGI  120
DPNNHRMGLV RPTKSFVSNN HSCKEANSQA DNFPVLNSST SGPVSNISSF PDLNLDLTIG  180
LPIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-301011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345473e-45AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878004.11e-132myb-related protein 308-like
SwissprotP813934e-78MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2N9H6A61e-102A0A2N9H6A6_FAGSY; Uncharacterized protein
STRINGXP_010032675.15e-94(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-79myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]