PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01814-snap-gene-0.34-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | G2-like | ||||||||
Protein Properties | Length: 227aa MW: 25201.5 Da PI: 9.7226 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.7e-33 | 34 | 88 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl maker-scaffold01814-snap-gene-0.34-mRNA-1 34 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 88 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-32 | 31 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.926 | 31 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-16 | 34 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 34 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-9 | 36 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MESNYSGGGG GGGGVGRAGS YPYENAVMMT RDPKPRLRWT ADLHERFVDA VTKLGGPDKA 60 TPKSVLRLMG LKGLTLYHLK SHLQKYRLGQ QARRQNTVEQ NKESNEAQGK YLQAILEKAH 120 KSLSLDITGP GSLEAARAQL TDFNLALSNL MENMNGGERK ENMNNIFKKP NSSAIQIYQE 180 VGREENEDVK LKIEGGLIQF DLNTKGSYDF FAANGAELET KMLSYRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-20 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-20 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-20 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-20 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 34 | 90 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889450.1 | 1e-118 | myb family transcription factor PHL11 | ||||
Swissprot | C0SVS4 | 3e-49 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2N9FA75 | 1e-112 | A0A2N9FA75_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0001s01560.1 | 5e-95 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 3e-51 | G2-like family protein |
Publications ? help Back to Top | |||
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