PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00818-augustus-gene-0.56-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 337aa MW: 37620.4 Da PI: 7.8613

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00818-augustus-gene-0.56-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	82	106	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f + G C G+ Ck+aHg maker-scaffold00818-augustus-gene-0.56-mRNA-1 82 YKTKMCTSFIA-GMCTKGSDCKYAHG 106 9********.***********8 PP
2	zf-CCCH	19.6	1.7e-06	147	166	6	25
-SGGGGTS.--TTTTT-SS-S CS zf-CCCH 6 CrffartG.tCkyGdrCkFaH 25 C+ f G +C+yGdrC+F H maker-scaffold00818-augustus-gene-0.56-mRNA-1 147 CKKFCY-GeECPYGDRCNFLH 166 555555.559*********** PP
3	zf-CCCH	36.9	5.9e-12	225	249	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + r G+C+yGd+C+FaHg+ maker-scaffold00818-augustus-gene-0.56-mRNA-1 225 KTKLCNSWER-GQCHYGDKCHFAHGQ 249 9*******.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.83E-8	79	112	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.8E-13	79	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-4	81	107	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.3	81	108	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-7	141	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.793	141	169	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-7	143	167	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.014	143	168	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-9	220	254	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-15	220	253	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.375	223	250	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-9	225	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-5	225	249	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSFPDPHPLF MMQSQHFASD AIGVWPQAPM NNDQFDGHSQ PFKRPRNSED NLSDALPCTP 60 MNSRMNPPNP PPINKGTSNI FYKTKMCTSF IAGMCTKGSD CKYAHGIEDM RQPPPNWQEL 120 AGLRGVEDRS SGNWDDDQML IHKLKLCKKF CYGEECPYGD RCNFLHEDPA KFRDDSKRFR 180 ESSVINIGTS GSSMAHGSVS NQSDGSRPVN NGPDAFRVTT RPYLKTKLCN SWERGQCHYG 240 DKCHFAHGQA ELRVAVGLLE GETLSTGSIS VLAKPQSVPA NDASLIKTGS VPTLTEEGQQ 300 GKKCLLKWKR PQKINRIYGD WLDDMPLVQH LPSKVES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891540.1	0.0	zinc finger CCCH domain-containing protein 39
Swissprot	Q9LT81	8e-96	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	A0A2N9IA20	0.0	A0A2N9IA20_FAGSY; Uncharacterized protein
STRING	XP_008242734.1	1e-136	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8333	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-90	C3H family protein