PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00305-augustus-gene-1.15-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WRKY

Protein Properties

Length: 258aa MW: 28835.7 Da PI: 10.1342

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00305-augustus-gene-1.15-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.4e-31	192	249	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ maker-scaffold00305-augustus-gene-1.15-mRNA-1 192 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 249 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.7E-18	143	188	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.1E-33	178	250	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	185	251	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	188	250	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	190	250	IPR003657	WRKY domain
Pfam	PF03106	1.8E-27	192	249	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEDVEEASKA AVESSHRVLN LLSQPQDQVQ CRNLMVETRE AVSRFKKVVS ILNSRVGHAR 60 VRMPNKVQIP LPHSIFLESP LCRTDHQPKN LQFLQSSFSE NPIQDMGSNV KNGSVANLDG 120 SHGSAFHLIG APHSSDQNSQ QHKRKCSGRG DDGSVKCGSS GRCHCSKKRK HRVKRSIKVP 180 AISNKLADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEEPSMLIV 240 TYEGEHNHPR LPSQSTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	183	252	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP732523	1e-117	KP732523.1 Morus alba transcription factor WRKY21-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022155836.1	1e-117	probable WRKY transcription factor 21
Swissprot	Q93WU6	7e-83	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A151S345	1e-133	A0A151S345_CAJCA; Putative WRKY transcription factor 39
STRING	GSMUA_Achr9P10740_001	1e-105	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	3e-85	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]