PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00149.80 | ||||||||
Common Name | AMTR_s00149p00097070, LOC18437464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 24336.2 Da PI: 6.302 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H evm_27.model.AmTr_v1.0_scaffold00149.80 62 YTCAFCRREFRSAQALGGHMNVH 84 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.78E-6 | 59 | 88 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVSELGFFDS MPDRKPEEKI GLSYGQNPWV WSAKQRNKED DSWEVRAFAQ DTSGPTWPPR 60 SYTCAFCRRE FRSAQALGGH MNVHRRDRAR LLHPSPNPYP NANSLLVTTT QDFPRGLCFL 120 YPIQNPNPNS SPPMFSPNTD PTINSMPTLL SISPHPSDTT HSFPSPSSAQ YFPISASALS 180 HLHNLEHAFM VEAEAPIMEQ EEELDLELRL GVRAAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 57 | 84 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 57 | 84 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006847735.1 | 1e-161 | transcriptional regulator SUPERMAN | ||||
TrEMBL | W1PNM3 | 1e-159 | W1PNM3_AMBTC; Uncharacterized protein | ||||
STRING | ERN09316 | 1e-160 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 7e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00149.80 |
Entrez Gene | 18437464 |
Publications ? help Back to Top | |||
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