PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00140.26
Common NameAMTR_s00140p00061590, LOC18432941
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 429aa    MW: 47049.1 Da    PI: 8.5379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00140.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.6e-07268290123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                              + C++Cgk F+r  nL+ H+r H
  evm_27.model.AmTr_v1.0_scaffold00140.26 268 HYCHICGKGFKRDANLRMHMRAH 290
                                              68*******************99 PP
2zf-C2H210.60.0018361384123
                                              EEETTTT.EEESSHHHHHHHHHHT CS
                                  zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                              y+C+ C+ k Fs  s+L++H + +
  evm_27.model.AmTr_v1.0_scaffold00140.26 361 YVCNRCNrKKFSVLSDLRTHEKHC 384
                                              9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.33E-6265292No hitNo description
Gene3DG3DSA:3.30.160.603.1E-6268295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.487268295IPR007087Zinc finger, C2H2
SMARTSM003550.0054268290IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
SMARTSM00355100323356IPR015880Zinc finger, C2H2-like
SMARTSM0035521361383IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MISNTTTTTT PSYFAPPPQH NRGGGGVNNG GGGNQNCAGA PMSMVEGAPS SSHIGLCTGL  60
PRSIQDHGTS SGLRREHQYH HPETLLFNLG ILKEKVHQVQ ALVDLIFSPG DQEAAPVVAV  120
GMSTAIQELM ATASSMMFAC QQFALNTNTI FQVPANGELQ PPMSNMNQVD MHMNPTHGPP  180
PREFPNHNGI IGEELDNSVN SGKISNSSRN YDSGVYGSNG AVSNNKNKIR GFRSEGDGGG  240
RLGEIRDMLS SYAIIELDAD DLLAEYTHYC HICGKGFKRD ANLRMHMRAH GDEYKSNAAL  300
TKPSSMGEQR DPSPSLMNIP RKFSCPQEGC RWNKKHVKFQ PLKSMICVKN HYKRSHCPKM  360
YVCNRCNRKK FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLLGHVALF VGHSPITRYS  420
TEIQTSDQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843103.10.0zinc finger protein STOP1 homolog
TrEMBLW1PA330.0W1PA33_AMBTC; Uncharacterized protein
STRINGERN047780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.19e-97C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]