PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00127.17 | ||||||||
Common Name | AMTR_s00127p00060060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24885.2 Da PI: 6.1527 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELSvLCda+v viifs tgkl+eyss evm_27.model.AmTr_v1.0_scaffold00127.17 9 KKIDNATARQVTFSKRRRGLFKKAHELSVLCDAQVGVIIFSATGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 57.8 | 4.7e-20 | 79 | 171 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 ++ + + +++l+ L ++ +L + +R++ Ge+L+ L++++Lq+Le+ Le++l+++ s+K e+l+++ evm_27.model.AmTr_v1.0_scaffold00127.17 79 EDSPSLELHMENRDLSWLSAQAAELTHIIRQMRGEELQGLTIQHLQKLESTLESGLSRVLSRKGEVLMKE 148 45555566677889999***************************************************** PP K-box 77 ieelqkkekelqeenkaLrkkle 99 i++lq++e +l een +L++++e evm_27.model.AmTr_v1.0_scaffold00127.17 149 IDDLQRQEMKLMEENARLSQQIE 171 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.249 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.27E-41 | 2 | 69 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-32 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.58 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-17 | 89 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAHELSVLCD AQVGVIIFSA TGKLFEYSSS 60 SMEDIVDKYF MDSKNLQKED SPSLELHMEN RDLSWLSAQA AELTHIIRQM RGEELQGLTI 120 QHLQKLESTL ESGLSRVLSR KGEVLMKEID DLQRQEMKLM EENARLSQQI ERMKTTTEMQ 180 QQQGMVVDSE GQSCESMTNT NNSGPYSDSS DTSLKLGGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-21 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020517657.1 | 1e-159 | MADS-box protein JOINTLESS isoform X2 | ||||
Swissprot | Q9FUY6 | 3e-79 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | W1NQY5 | 1e-159 | W1NQY5_AMBTC; Uncharacterized protein | ||||
STRING | ERM97390 | 1e-160 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6076 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-80 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00127.17 |
Publications ? help Back to Top | |||
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