PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.271 | ||||||||
Common Name | AMTR_s00025p00208390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19128 Da PI: 6.7703 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.6e-16 | 6 | 48 | 8 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +r+ tf kR++g+ KKA+E S+LC+++ +++ fs++g l ++ evm_27.model.AmTr_v1.0_scaffold00025.271 6 QRNDTFRKRKKGLKKKASEFSILCGVDTCLVSFSPNGDLDIWP 48 5777***********************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-5 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.722 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.23E-15 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-16 | 5 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGRPNQRNDT FRKRKKGLKK KASEFSILCG VDTCLVSFSP NGDLDIWPED KSTTCMNVVQ 60 RERLSMGNVG VVQKMEEQEV REIERGEMIN PHLLNQLLPC NFPVMNVEPI SMKPSENLGR 120 HDGLYGTSEN LGLHEGVYKA GEMEQFQNVN FGVRPLMGFD PKNTMLTPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 15 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020526799.1 | 5e-62 | MADS-box transcription factor 25-like | ||||
TrEMBL | W1PR94 | 1e-122 | W1PR94_AMBTC; Uncharacterized protein | ||||
STRING | ERN12557 | 1e-122 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11250.1 | 3e-08 | AGAMOUS-like 52 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.271 |
Publications ? help Back to Top | |||
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