PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.55
Common NameAMTR_s00019p00079600, LOC18435303
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 504aa    MW: 56666.5 Da    PI: 5.319
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-06147169326
                                              S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                              +++C+ff++   C++G++C+ +Hg
  evm_27.model.AmTr_v1.0_scaffold00019.55 147 MVICKFFLQ-QRCRFGNNCRLSHG 169
                                              579******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-6144170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5145169IPR000571Zinc finger, CCCH-type
SMARTSM004439.5E-15306352IPR000467G-patch domain
PfamPF015851.2E-13308350IPR000467G-patch domain
PROSITE profilePS5017413.057308354IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAEDDDGELE KQLELQLMEQ KESLGAINDA LVSDPQNPEL IMVHEELIAA IKAAEEGLFH  60
LKRSRLLLEA NHLISGAGSD SNYQEVEPEP LEPSKVEAEP LEEKGFSVGA RCRFRHTNGR  120
WYDGHVIGIE GVHSAKISFS TPTSENMVIC KFFLQQRCRF GNNCRLSHGV DMPLSSLKPY  180
IPPIWRQSLV GSSVFALTDS QAGIWREAEL ESWDDGLKMG QVVFRDDGTH AKLGSDFLSL  240
YEYAQLSNEE QETSSRGSET SDDEEDELGA SPGGLGLSPN GVGFLQASSL RHGVQTETAV  300
FAKWEVHTRG VASKMMANMG YREGMGLGSS GQGIVDPIPV KVLPPKQSLD YINGVEERET  360
KREKKRSRGG RRKREKRYAE AQRAAKAEEE VANDVFGFIN NQLAMQKENE REKLGRSEVK  420
EREIKREDRR ALVAYDEEVR ELRNRVEKLE EMVERNRREK AVFEAASRKL NETRRALADA  480
EAARAAVSNE VTRKEKEKRW LKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370375RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845412.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ6K6870.0C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLW1PAZ80.0W1PAZ8_AMBTC; Uncharacterized protein
STRINGERN070870.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP557055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-139C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]