PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.309
Common NameAMTR_s00012p00258820
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 288aa    MW: 32183.2 Da    PI: 9.0486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.309genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175173123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              y+C+ C++ F++   L  H+++H
  evm_27.model.AmTr_v1.0_scaffold00012.309 51 YSCTFCKREFRSAQALGGHMNVH 73
                                              99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-64877No hitNo description
PROSITE profilePS5015711.1775178IPR007087Zinc finger, C2H2
PfamPF139125.9E-65174IPR007087Zinc finger, C2H2
SMARTSM003550.00655173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEQTRYWMWT RRKFMASSGN RAANYDSWEE QAFAEDSAGP LGGFIWPPRS YSCTFCKREF  60
RSAQALGGHM NVHRRDRARL RQSPSPHSET QSLLNQYPSE PCTLTYPNPN FSPSLSSTEV  120
SGPSNSCCKA NCSHMNLGSP PAGLSISSFS SSAVVMPQQK HKASFASSPP LISESLDVEV  180
LSLTGSKHKL ELSGLPKIDA HKIKEHRNFD GLEKLDPEAS LPNMFKKRRV WEDDEDRESG  240
ESLTRKRSKK CEFFPYVAGL FTKTASAVEE LDLELRLGSK PSRLKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-134673229superman protein
2l1o_A9e-134673229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524107.10.0zinc finger protein 10-like
TrEMBLW1PK340.0W1PK34_AMBTC; Uncharacterized protein
STRINGERN080210.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-25zinc-finger protein 10
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]