PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_69.31
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 171aa    MW: 19225.1 Da    PI: 9.9473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_69.31genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08857255
                                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                 r+  n+ Er+RR r+++  ++L +llP++     ++++  e   kA+ YI++L+
  evm.model.supercontig_69.31  8 RQHRNIQERNRRLRMRELCSTLVSLLPPQ----PTRVTVYELIGKATSYINQLK 57
                                 8999************************6....39*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-5561No hitNo description
SuperFamilySSF474597.98E-11670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.284656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-10870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MERASSSRQH RNIQERNRRL RMRELCSTLV SLLPPQPTRV TVYELIGKAT SYINQLKERI  60
KAANDEKNQV LKLLGGGNGD RTGEEIRAVV KLTSRNQCSL EVNIISGTNK TFMLHEVISI  120
LQEEGAQVSN IALHNIVGHR TIYVIHSQAI NSRIGLETSR IEERLLDLLC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1718RQHRNIQERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_69.31
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895810.11e-120transcription factor bHLH168-like
STRINGevm.model.supercontig_69.311e-119(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-31bHLH family protein